Software to view mri images on mac
The tech had told me that the doctor can make copies, so why can't I? Do I need another program? A different copy procedure? Any help will be appreciated. I thought it would be till those shipped. You may also be able to create a folder and copy the entire contents to it. From there, you get to find and launch the viewing utility. It may or may not know exactly where your the images are, however.
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In any event, it's easy enough to make copies of the CD and it's a good idea to do so. You may need them for insurance or other purposes. As for not being able to click on the image files and view them, that's because Windows doesn't have a native viewer. These tend to be proprietary files and need the utility on the CD to view them. You said there were something around pictures but you can't get past the first 6. This is because you're really looking at something that's more a compiled set of images into a single file and is more like a movie or slide show. The doctor can move forward and backward through the image slices using the viewer.
If there are 6 files, the technician made 6 difference scans varying the angle of view or location with each pass. I was initially under the impression that I had to copy the file to my computer, then to another CD. However, I did find a site that said I could copy it from one drive to the other using My Computer.
It copied the DICOM viewer as well as the pictures, and unlike the other method I used desktop I was able to view the scans and other information. It must not have liked my desktop as a storage space. As to the amount of memory, I have a Dell Dimension, which came with extra slots for memory, which I recently upgraded to the optimum level.
I did look for a DICOM viewer, but the site I went to was different from the one suggested -- and a bit confusing to the layman.
If I ever need to install the viewer, I get it from your site, Bob. Hi Could you tell me how exactly in steps you copied your MRI? Im having same problem and cannot seem to figure it out. Can it be saved onto a memory stick? Do you know approx space I will need? Thank you so much. Im really hoping to get a second opinion on my back issues!
Scoobyfan said copy from one drive to another. But if your computer don't have 2 drives, you might create an. ISO of the dvd or cd to the harddrive first then make a dvd or cd from the. Discussion is locked. Follow Follow this discussion and email me when there are updates Stop following this discussion. If so, how? Please remember to be considerate of other members. The viewer supports multiple 2d viewing modes orthogonal, lightbox or single slices , but also 3d volume rendering. Additionally FSLView is able to visualize timeseries and can overlay metrical and stereotaxic atlas data.
The maintainers did never respond whether they plan to bring back a more recent version of this package. It is primarily intended for analysis of height field data obtained by microscopy techniques like. This package contains the main application and its modules. It can display, edit, analyze, process, save and print 8-bit, bit and bit images. It supports "stacks", a series of images that share a single window. It can calculate area and pixel value statistics of user-defined selections.
It can measure distances and angles. It can create density histograms and line profile plots. It supports standard image processing functions such as contrast manipulation, sharpening, smoothing, edge detection and median filtering. Spatial calibration is available to provide real world dimensional measurements in units such as millimeters.
Density or gray scale calibration is also available. ImageJ is developed by Wayne Rasband wayne codon. ImageVis3D is a volume rendering application specifically designed to render large data. This is achieved by splitting the dataset into multiple levels of detail LoD , with each level itself decomposed into multiple bricks atomic rendering primitive. Interaction occurs at the coarsest LoD, which can be rendered instantaneously on almost all modern systems. After a configurable delay, ImageVis3D will successively render finer levels of detail, until the data are visible at their native resolution.
SNAP provides semi-automatic segmentation of structures in medical images e. Noteworthy features are:. It supports a set of graphics primitives that make it suitable for many types of graphs, plots, and other illustrations; although its first use was to display macromolecular structures for biophysical research. KiNG builds on Mage, JavaMage, and the "kinemage" kinetic image concept to deliver a full-featured Java application with a user-friendly interface and integrated editing features. The KiNG jar file can be used within a web page as a Java applet or Java object to promote easy access to kinemages or coordinate files from a web browser.
Install this package for the gdcmanon, gdcmconv, gdcmdiff, gdcmdump, gdcmpap3, gdcmgendir, gdcmimg, gdcminfo, gdcmpdf, gdcmraw, gdcmscanner, gdcmscu, gdcmtar, gdcmxml programs. This is a software package for the data processing and evaluation of functional magnetic resonance images. The analysis of fMRI data comprises various aspects including filtering, spatial transformation, statistical evaluation as well as segmentation and visualization. For the statistical evaluation, a number of well established and peer-reviewed algorithms were implemented in LIPSIA that allow an efficient and user-friendly processing of fMRI data sets.
As the amount of data that must be handled is enormous, an important aspect in the development of LIPSIA was the efficiency of the software implementation. This project stands for Medical Image Conversion. Command lines tools to run general purpose image processing tasks on 2D and 3D gray scale images, and basic operations on triangular meshes. Supported image processing algorithms are image filtering, combining, image registration, motion compensation for image series, and the estimation of various statistics over images.
This package also contains the nipype interfaces for these command line tools. MIA viewer program for the visualization of 3D data sets. The interfaces and supported data types focus on the results that can be obtained by running programs from the mia-tools package. This tool provides a simple 3D renderer that can visualize surfaces directly from 3D volumes and can be used to set 3D landmarks.
It is best suited for CT data sets. The Minc file format is a highly flexible medical image file format built on top of the NetCDF generalized data format. The format is simple, self-describing, extensible, portable and N-dimensional, with programming interfaces for both low-level data access and high-level volume manipulation. On top of the libraries is a suite of generic image-file manipulation tools. The format, libraries and tools are designed for use in a medical-imaging research environment: they are simple and powerful and make no attempt to provide a pretty interface to users.
This is a GUI-based visualization and analysis tool for functional magnetic resonance imaging. MRIcron can be used to create 2D or 3D renderings of statistical overlay maps on brain anatomy images. Moreover, it aids drawing anatomical regions-of-interest ROI , or lesion mapping, as well as basic analysis of functional timeseries e.
Set of tools to perform diffusion-weighted MRI white matter tractography of the brain in the presence of crossing fibres, using Constrained Spherical Deconvolution, and a probabilisitic streamlines algorithm. NIfTI-1 is a binary file format for storing medical image data, e. It covers the whole toolchain of MRI, from low-level data acquisition to image reconstruction.
In particular, it aims at rapid prototyping of MRI sequences. It provides advanced sequence analysis tools, such as interactive plotting of k-space trajectories, a user interface for a fast compile-link-test cycle and a powerful MRI simulator which supports different virtual samples. For fast and flexible image reconstruction, ODIN contains a highly customizable, multi-threaded data-processing framework.
Solvers are based on the symmetric Boundary Element method [Kybic et al, ], providing excellent accuracy, particularly for superficial cortical sources. OpenSlide is a C library that provides a simple interface to read whole-slide images also known as virtual slides. Whole-slide images, also known as virtual slides, are large, high resolution images used in digital pathology. Reading these images using standard image tools or libraries is a challenge because these tools are typically designed for images that can comfortably be uncompressed into RAM or a swap file.
Whole-slide images routinely exceed RAM sizes, often occupying tens of gigabytes when uncompressed. Additionally, whole-slide images are typically multi-resolution, and only a small amount of image data might be needed at a particular resolution. Its architecture is lightweight, meaning that no complex database administration is required, nor the installation of third-party dependencies.
Thanks to this major feature, it is possible to drive Orthanc from any computer language. Support for proprietary file formats is available through OpenSlide. Plastimatch is an open source software for deformable image registration.
It is designed for high-performance volumetric registration of medical images, such as X-ray computed tomography CT , magnetic resonance imaging MRI , and positron emission tomography PET. Software features include:. DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging dMRI analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities.
Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. PyMVPA eases pattern classification analyses of large datasets, with an accent on neuroimaging. It provides high-level abstraction of typical processing steps e.
While it is not limited to neuroimaging data e. Previously released stable version is provided by the python-mvpa package. The various image format classes give full or selective access to header meta information and access to the image data is made available via NumPy arrays.
NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for. Nipype interfaces Python to other neuroimaging packages and creates an API for specifying a full analysis pipeline in Python. Nitime is a Python module for time-series analysis of data from neuroscience experiments. It contains a core of numerical algorithms for time-series analysis both in the time and spectral domains, a set of container objects to represent time-series, and auxiliary objects that expose a high level interface to the numerical machinery and make common analysis tasks easy to express with compact and semantically clear code.
This is a Python package for visualization and interaction with cortical surface representations of neuroimaging data from Freesurfer. SigViewer is a viewing and scoring software for biomedical signal data. Besides displaying biosignals, SigViewer supports creating annotations to select artifacts or specific events. Slicer is an application for computer scientists and clinical researchers.
The platform provides functionality for segmentation, registration and three-dimensional visualization of multi-modal image data, as well as advanced image analysis algorithms for diffusion tensor imaging, functional magnetic resonance imaging and image-guided therapy. Standard image file formats are supported, and the application integrates interface capabilities to biomedical research software and image informatics frameworks.
SOFA is an Open Source framework primarily targeted at real-time simulation, with an emphasis on medical simulation. It is mostly intended for the research community to help develop newer algorithms, but can also be used as an efficient prototyping tool. Teem is a coordinated group of libraries for representing, processing, and visualizing scientific raster data. Teem includes command-line tools that permit the library functions to be quickly applied to files and streams, without having to write any code.
The most important and useful libraries in Teem are:. This package contains some simple command-line tools which provide fast and easy access to the functionality in the various libraries. VIA is a volumetric image analysis suite for functional and structural medical images. The suite consists of different tools ranging from simple data handling over viewers to complex image transformation.
The package contains several converters from e. This is a toolkit for analysis of functional neuroimaging chiefly fMRI experiments and voxel-based lesion-behavior mapping.
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The command line tools primarily provide the following functionality: registration affine and nonrigid; single and multi-channel; pairwise and groupwise , image correction MR bias field estimation; interleaved image artifact correction , processing filters; combination of segmentations via voting and STAPLE; shape-based averaging , statistics t-tests; general linear regression. The Connectome Viewer is a extensible, scriptable, pythonic research environment for visualization and network analysis in neuroimaging and connectomics.
Employing the Connectome File Format, diverse data types such as networks, surfaces, volumes, tracks and metadata are handled and integrated. The software consists of a collection of algorithms that are commonly used to solve medical image registration problems. The modular design of elastix allows the user to quickly configure, test, and compare different registration methods for a specific application. A command-line interface enables automated processing of large numbers of data sets, by means of scripting.
ImageMagick is a software suite to create, edit, and compose bitmap images. All manipulations can be achieved through shell commands as well as through an X11 graphical interface display. OpenWalnut is a tool for multi-modal medical and brain data visualization. Its universality allows it to be easily extended and used in a large variety of application cases. It is both, a tool for the scientific user and a powerful framework for the visualization researcher.
OpenWalnut provides many standard visualization tools like line integral convolution LIC , isosurface-extraction, glyph-rendering or interactive fiber-data exploration.
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The powerful framework of OpenWalnut allows researchers and power-users to easily extend the functionality to their specific needs. This makes its installation and its use quite straightforward. They bring scalability to Orthanc, making it enterprise-ready. ParaView is an open-source, multi-platform application designed to visualize data sets of size varying from small to very large.
The goals of the ParaView project include the following:. ParaView runs on distributed and shared memory parallel as well as single processor systems and has been successfully tested on Windows, Mac OS X, Linux and various Unix workstations, clusters and supercomputers. Under the hood, ParaView uses the Visualization Toolkit as the data processing and rendering engine and has a user interface written using Qt.
Such images are usually two to four times smaller than the full bit versions, and partial transparency is preserved quite nicely. Optimizers like pngcrush and optipng optimize the compression, usually losslessly, while pngquant quantizes colors down to or fewer distinct RGBA combinations, which is lossy. This task lists some packages providing workflow management systems useful for scientific research.
Trimage is a cross-platform GUI and command-line interface to optimize image files via optipng, advpng, pngcrush and jpegoptim, depending on the filetype currently, PNG and JPG files are supported. All image files are losslessly compressed on the highest available compression levels. Trimage gives you various input functions to fit your own workflow: A regular file dialog, dragging and dropping and various command line options.
The only purpose of this package is to enable upgrades to the new 'fsl-core' package which replaces 'fsl'. This package can safely be removed. Users aiming to perform a complete FSL installation including all data components are advised to install the 'fsl-complete' package from NeuroDebian.
The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. Many packages are available that are highly extensible, and provide functionality for image visualization and registration, surface editing, cardiac 4D multi-slice editing, diffusion tensor image processing, mouse segmentation and registration, and much more. This site provides information, downloads, documentation, and other resources for users of the software.
BioImage Suite was developed at Yale University and has been extensively used at different labs at Yale since BioImageXD is a multi-purpose post-processing tool for bioimaging. The software can be used for simple visualization of multi-channel temporal image stacks to complex 3D rendering of multiple channels at once.
Animations of 3D renderings can be created using flying paths or keyframes. BioImageXD has basic image adjustment operations and a collection of noise reduction methods. Processing methods are accompanied with a selection of segmentation methods. Segmentation results can be analysed for tens of parameters or used for motion tracking. Other quantitative analysis methods include for instance voxel and object colocalization methods and internalization analysis.
Can I copy MRI CD to my computer? If so, how?
All processing and analysis methods can be build into pipelines and run for hundreds of datasets at once in batch processor. CellProfiler is cell image analysis software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically. The CreaTools are a suite of medical image processing and visualization software and development tools. The CreaTools are a set of tools designed to meet both the needs of the end-users physicians, students or researchers and of the developers.
This project contains the source code for the core Java Advanced Imaging API reference implementation containing the packages javax. FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. It contains a fully automatic structural stream for processing cross sectional and longitudinal data. FreeSurfer provides many anatomical analysis tools, including: representation of the cortical surface between white and gray matter, representation of the pial surface, segmentation of white matter from the rest of the brain, skull stripping, B1 bias field correction, nonlinear registration of the cortical surface of an individual with an sterotaxic atlas, labeling of regions of the cortical surface, statistical analysis of group morphometry differences, and labeling of subcortical brain structures, etc.
A variety of applications providing segmentation, registration, and other medical image processing algorithms such as MRI bias field correction. It covers the "let's see the the X-ray image" need of the medical professional. It lets you execute common microscope image acquisition strategies such as time-lapses, multi-channel imaging, z-stacks, and combinations thereof. Unencumbered code provides a GUI for microscope image acquisition, a hardware interface layer and hardware interfacing for:.
Unfortunately there is a pile of dirty licenses involved so I'm not sure this is ready for Debian yet. Some of the code cannot be given out and some drivers require kernel modules to be built. You have to sign NDAs to get access to all the code. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders.
MIPAV provides an interface for plug-ins and serves as the foundation for other projects e. You will have a choice of reviewing the license and accepting or declining it upon installation. This template MRI volume was created from 27 T1-weighted MRI scans of a single individual that have been transformed into the Talairach stereotaxic space. The anatomical image is complemented by a brain and a head mask. All images are in 1x1x1 mm resolution. Output is a rich HTML report. VisIt is a free interactive parallel visualization and graphical analysis tool for viewing scientific data.
Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector fields defined on two- and three-dimensional 2D and 3D structured and unstructured meshes. VisIt was designed to handle very large data set sizes in the terascale range and yet can also handle small data sets in the kilobyte range.
The primary functionality of XNAT is to provide a place to store and control access to neuroimaging data. This includes sophisticated user control, search and retrieval, and archiving capabilities. As open-source software, XNAT also supports a wide variety of research-based processing pipelines, and is able to link up with supercomputer processing power to dramatically shorten image processing time. Two packages are provided:.
This standard specifies the way medical images and meta data like study or patient related data is stored and communicated over different digital medias. NET Framework. In contrast to other similar libraries the intention of this implementation is to provide a clean classification with support of unidirectional DICOM data streaming. This is not standard conform but very use- and powerful within software development, storage and manipulation.
These utils are written in C for Mono and the. Connectivity to GIMP is also given for single image processing purpose as well as the possibility to run through multi-frame images like a movie. NET and works in the background of your system, but is able to detect content changes in realtime depending on your configuration. DeVIDE, or the Delft Visualization and Image processing Development Environment, is a Python-based dataflow application builder that enables the rapid prototyping of medical visualization and image processing applications via visual programming.
In other words, by visually connecting functional blocks think Yahoo pipes , you can create cool visualizations. It implements a state-of-the-art registration algorithm that drives the alignment of white matter WM tracts by matching the orientation of the underlying fiber bundle at each voxel. The algorithm has been shown to both improve WM tract alignment and to enhance the power of statistical inference in clinical settings.
The key features include:. ISIS is extensible with plugins to add support for additional data formats. The general process of simulation consists of preparation by choice or implementation of sequence, sample and coil setup and the invocation of the simulation run itself. In its first release, OpenSourcePACS delivers a complete wet read system, enabling an imaging clinic or hospital to offer its services over the web to physicians within or outside the institution.
CD sent to me from hospital with images of MRI's but it won't load on my computer.
In future releases, we hope to incorporate more RIS dictation, transcription, and reporting functionality. BrainVISA is a software, which embodies an image processing factory. A simple control panel allows the user to trigger some sequences of treatments on series of images. These treatments are performed by calls to command lines provided by different laboratories. These command lines, hence, are the building blocks on which are built the assembly lines of the factory. Contained within the dcm4che project is dcm4chee the extra 'e' stands for 'enterprise'.
The application contains the DICOM, HL7 services and interfaces that are required to provide storage, retrieval, and workflow to a healthcare environment. It is specifically aimed at postprocessing of segmented datasets, but offers some functionality for raw data as well. This application allows neuroscientists to place and interactively manipulate box-shaped regions or volumes of interest to selectively display pathways that pass through specific anatomical areas. A simple and extensible query language allows for arbitrary combinations of these queries using Boolean logic operators.
Queries can be further restricted by numerical path properties such as length, mean fractional anisotropy, and mean curvature. This program is designed to convert scanned lead electrocardiograms into PNG format and a web-friendly image size. It assumes that the electrocardiogram ECG is printed with a black line on white paper with a red grid. The problems this program is designed to solve are 1 an ECG scanned at relatively high resolution to dots per inch imposes a substantial load on the web browser because it contains about 6 million pixels which may require 18 to 24 MB of RAM to store for display.
Also, 2 typical scanners convert a clean paper ECG into a multitude of colors, include green and blue. The resulting file cannot be compressed efficiently because it does not contain as much redundancy, and thus takes more time to transmit over low-speed network connections. GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins.
In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development. The architecture of the single packages is based on the concept of IHE actor: this is very useful to develop a system that is an ensemble of single pieces that cooperate together using IHE profiles.
Photograph, manage, view, compare, document and archive medical photos fully integrated into doctor's practice systems. Take a photo and immediately see how the picture gets archived to your current patient automatically. Louis, the MESA tools are designed for use by participating companies in implementing IHE capabilities in their systems and preparing for the Connectathon. Their purpose is to provide communication partners, test data and test plans to allow organizations to provide a baseline level of testing as they implement the IHE Technical Framework.
These tools are made available to participants during the period of an IHE demonstration year and are then released into the public domain at the end of that cycle. This kind of software is definitively valuable for information systems vendors and imaging systems vendors. The version of CTN software in those tools does not have a separate release number but is more current than version 3. This is an unbiased standard magnetic resonance imaging template volume for the normal human population. The package provides a 1x1x1 mm and 0.
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In addition, it contains a lobe atlas, and masks for brain, eyes and face. It allows intrinsic tissue parameters T1, T Currently, no artifacts are implemented. OMERO is client-server software for visualisation, management and analysis of biological microscope images.
Piano is a library containing roughly 75 algorithms and tools for multi-dimensional medical image processing, analysis and visualization. It is used in the field of surgical planning. Its aim is to provide a Multi-Platform Object-Oriented framework for all data manipulations in tomographic imaging. Currently, the emphasis is on iterative image reconstruction in PET, but other application areas and imaging modalities can and might be added.
Topographic maps are generated over 3D head model and user is able to navigate around head and examine maps from different viewpoints. Most mapping parameters are adjustable through appropriate graphical user interface controls. Also, individual topographic maps could be saved in PNG format for future examination or publishing. Help us to see Debian used by medical practitioners and biomedical researchers!
Join us on the Salsa page. Description For a better overview of the project's availability as a Debian package, each head row has a color code according to this scheme: Official Debian packages with high relevance Official Debian packages with lower relevance Debian packages in contrib or non-free Packaging has started and developers might try the packaging code in VCS Unofficial packages built by somebody else No known packages available but some record of interest WNPP bug No known packages available If you discover a project which looks like a good candidate for Debian Med to you, or if you have prepared an unofficial Debian package, please do not hesitate to send a description of that project to the Debian Med mailing list.
Index of all tasks. Biology development. Next generation sequencing. Hospital information systems. Imaging development. Popcon : 55 users 82 upd. Versions and Archs. Edit Debtags. Official Debian package. Popcon : 30 users 23 upd. PubMed Molecular Imaging 2 3 Other screenshots of package amide Version URL 1. Popcon : 17 users 3 upd. Newer upstream! Please cite: Brian B. Gee: The optimal template effect in hippocampus studies of diseased populations. Popcon : 12 users 16 upd. Go tagging. Upload screenshot. Popcon : 1 users 8 upd. Popcon : 10 users 13 upd.
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